Commit 725f065b authored by aduhamet's avatar aduhamet
Browse files

add config

parent f3fefaa9
format: CLASSIC
singularity:
ednatools: /usr/local/containers/ednatools.simg
obitools: /usr/local/containers/obitools.simg
fichiers:
rapidrun : NA
folder_fastq: ../resources/tutorial/tutorial_classic_data/ngs/rhone/runs/
dat:
161124_SND393_A_L005_GWM-849: ../resources/tutorial/tutorial_classic_data/ngs/rhone/metadata/MB1016K_Teleo.dat
161124_SND393_A_L005_GWM-850: ../resources/tutorial/tutorial_classic_data/ngs/rhone/metadata/MB1016L_Teleo.dat
161124_SND393_A_L005_GWM-851: ../resources/tutorial/tutorial_classic_data/ngs/rhone/metadata/MB1016M_Teleo.dat
161124_SND393_A_L005_GWM-852: ../resources/tutorial/tutorial_classic_data/ngs/rhone/metadata/MB1016N_Teleo.dat
161124_SND393_A_L005_GWM-853: ../resources/tutorial/tutorial_classic_data/ngs/rhone/metadata/MB1016O_Teleo.dat
161124_SND393_A_L005_GWM-854: ../resources/tutorial/tutorial_classic_data/ngs/rhone/metadata/MB1016P_Teleo.dat
161124_SND393_A_L005_GWM-855: ../resources/tutorial/tutorial_classic_data/ngs/rhone/metadata/MB1016Q_Teleo.dat
161124_SND393_A_L005_GWM-856: ../resources/tutorial/tutorial_classic_data/ngs/rhone/metadata/MB1016R_Teleo.dat
161124_SND393_A_L005_GWM-857: ../resources/tutorial/tutorial_classic_data/ngs/rhone/metadata/MB1016S_Teleo.dat
161124_SND393_A_L005_GWM-858: ../resources/tutorial/tutorial_classic_data/ngs/rhone/metadata/MB1016T_Teleo.dat
161124_SND393_A_L005_GWM-859: ../resources/tutorial/tutorial_classic_data/ngs/rhone/metadata/MB1016U_Teleo.dat
blacklist:
projet:
- dummy_run
run:
- dummy_run
illuminapairedend:
nb_chunk: 0
s_min: 40
good_length_samples:
seq_count : 1
seq_length_min : 23
clean_pcrerr_samples:
r : 0.05
assign_taxon:
bdr:
teleo: ../resources/tutorial/tutorial_classic_data/bdr/reference_database_teleo/embl_std
fasta:
teleo: ../resources/tutorial/tutorial_classic_data/bdr/reference_database_teleo/db_embl_std.fasta
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