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aduhamet
snakemake_rapidrun_obitools
Commits
725f065b
Commit
725f065b
authored
Jan 14, 2021
by
aduhamet
Browse files
add config
parent
f3fefaa9
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config/config_classic.yaml
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725f065b
format
:
CLASSIC
singularity
:
ednatools
:
/usr/local/containers/ednatools.simg
obitools
:
/usr/local/containers/obitools.simg
fichiers
:
rapidrun
:
NA
folder_fastq
:
../resources/tutorial/tutorial_classic_data/ngs/rhone/runs/
dat
:
161124_SND393_A_L005_GWM-849
:
../resources/tutorial/tutorial_classic_data/ngs/rhone/metadata/MB1016K_Teleo.dat
161124_SND393_A_L005_GWM-850
:
../resources/tutorial/tutorial_classic_data/ngs/rhone/metadata/MB1016L_Teleo.dat
161124_SND393_A_L005_GWM-851
:
../resources/tutorial/tutorial_classic_data/ngs/rhone/metadata/MB1016M_Teleo.dat
161124_SND393_A_L005_GWM-852
:
../resources/tutorial/tutorial_classic_data/ngs/rhone/metadata/MB1016N_Teleo.dat
161124_SND393_A_L005_GWM-853
:
../resources/tutorial/tutorial_classic_data/ngs/rhone/metadata/MB1016O_Teleo.dat
161124_SND393_A_L005_GWM-854
:
../resources/tutorial/tutorial_classic_data/ngs/rhone/metadata/MB1016P_Teleo.dat
161124_SND393_A_L005_GWM-855
:
../resources/tutorial/tutorial_classic_data/ngs/rhone/metadata/MB1016Q_Teleo.dat
161124_SND393_A_L005_GWM-856
:
../resources/tutorial/tutorial_classic_data/ngs/rhone/metadata/MB1016R_Teleo.dat
161124_SND393_A_L005_GWM-857
:
../resources/tutorial/tutorial_classic_data/ngs/rhone/metadata/MB1016S_Teleo.dat
161124_SND393_A_L005_GWM-858
:
../resources/tutorial/tutorial_classic_data/ngs/rhone/metadata/MB1016T_Teleo.dat
161124_SND393_A_L005_GWM-859
:
../resources/tutorial/tutorial_classic_data/ngs/rhone/metadata/MB1016U_Teleo.dat
blacklist
:
projet
:
-
dummy_run
run
:
-
dummy_run
illuminapairedend
:
nb_chunk
:
0
s_min
:
40
good_length_samples
:
seq_count
:
1
seq_length_min
:
23
clean_pcrerr_samples
:
r
:
0.05
assign_taxon
:
bdr
:
teleo
:
../resources/tutorial/tutorial_classic_data/bdr/reference_database_teleo/embl_std
fasta
:
teleo
:
../resources/tutorial/tutorial_classic_data/bdr/reference_database_teleo/db_embl_std.fasta
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