Loading main.sh +1 −1 Original line number Diff line number Diff line Loading @@ -59,7 +59,7 @@ all_sample_sequences_tag_spygen="${dereplicated_all/.fasta/.tag_spygen.fasta}" ecotag -d "$REF_DATABASE"/"${base_pref}" -R "$spygen_bdr_fasta" $dereplicated_all > $all_sample_sequences_tag_spygen ##The sequences can be sorted by decreasing order of count all_sample_sequences_sort="${all_sample_sequences_tag_spygen/.fasta/.sort.fasta}" obisort -k count -r $all_sample_sequences_tag > $all_sample_sequences_sort obisort -k count -r $all_sample_sequences_tag_spygen > $all_sample_sequences_sort ##generate a table final results obitab -o $all_sample_sequences_sort > final/all_spygen.csv Loading
main.sh +1 −1 Original line number Diff line number Diff line Loading @@ -59,7 +59,7 @@ all_sample_sequences_tag_spygen="${dereplicated_all/.fasta/.tag_spygen.fasta}" ecotag -d "$REF_DATABASE"/"${base_pref}" -R "$spygen_bdr_fasta" $dereplicated_all > $all_sample_sequences_tag_spygen ##The sequences can be sorted by decreasing order of count all_sample_sequences_sort="${all_sample_sequences_tag_spygen/.fasta/.sort.fasta}" obisort -k count -r $all_sample_sequences_tag > $all_sample_sequences_sort obisort -k count -r $all_sample_sequences_tag_spygen > $all_sample_sequences_sort ##generate a table final results obitab -o $all_sample_sequences_sort > final/all_spygen.csv
