Commits · master · edna / benchmark_pipelines

09 Dec, 2019 1 commit
- assign threshold · eeb23f20
  root authored Dec 09, 2019
  
  eeb23f20
06 Dec, 2019 20 commits
- update optimal pipeline · 9406e8a0
  root authored Dec 06, 2019
  
  9406e8a0
- update optimal pipeline · 685af521
  root authored Dec 06, 2019
  
  685af521
- Merge branch 'master' of github.com:lmathon/eDNA--benchmark_pipelines · 3edc2779
  root authored Dec 06, 2019
  
  3edc2779
- add -j 16 in cutadapt · be38ac7f
  root authored Dec 06, 2019
  
  be38ac7f
- Merge pull request #33 from lmathon/mega_modif · 4510286a
  peguerin authored Dec 06, 2019
```
update paired end fastq files URL Mega link
```
  4510286a
- update paired end fastq files URL Mega link · 944daeae
  peguerin authored Dec 06, 2019
  
  944daeae
- update readme · 391ac043
  root authored Dec 06, 2019
  
  391ac043
- update readme · 3e5d6200
  root authored Dec 06, 2019
  
  3e5d6200
- update input · 792b90b3
  root authored Dec 06, 2019
  
  792b90b3
- add Tags for optimal_pipeline · 398ec0bc
  root authored Dec 06, 2019
  
  398ec0bc
- Merge pull request #32 from lmathon/fix_opti_workflow · 01572ae2
  peguerin authored Dec 06, 2019
```
Fix opti workflow
```
  01572ae2
- Merge pull request #31 from lmathon/refix_flexbar · 27846e53
  peguerin authored Dec 06, 2019
```
Refix flexbar
```
  27846e53
- move to current dir · c1db7da4
  peguerin authored Dec 06, 2019
  
  c1db7da4
- move to current dir · 25cd9c04
  peguerin authored Dec 06, 2019
  
  25cd9c04
- move to current dir · 1fca1a14
  peguerin authored Dec 06, 2019
  
  1fca1a14
- move to current dir · 089a01d1
  peguerin authored Dec 06, 2019
  
  089a01d1
- tags cutadapt files · 8c7e5ee8
  peguerin authored Dec 06, 2019
  
  8c7e5ee8
- test parallel command adapter · b98fcc53
  peguerin authored Dec 06, 2019
  
  b98fcc53
- adapter truc · 67c361de
  peguerin authored Dec 06, 2019
  
  67c361de
- version OK · c4daa1f7
  peguerin authored Dec 06, 2019
  
  c4daa1f7
05 Dec, 2019 5 commits
- add folder outputs · a0e10598
  root authored Dec 05, 2019
  
  a0e10598
- add script optimal_pipeline · 91da721b
  root authored Dec 05, 2019
  
  91da721b
- rename folder · 8cd0e535
  root authored Dec 05, 2019
  
  8cd0e535
- remove tests folder · f1de30e8
  root authored Dec 05, 2019
  
  f1de30e8
- update all scripts · 97893468
  root authored Dec 05, 2019
  
  97893468
04 Dec, 2019 1 commit
- reformat primer fasta files · 6fe6ae3b
  peguerin authored Dec 04, 2019
  
  6fe6ae3b
03 Dec, 2019 4 commits
- test flexbar · 50782de4
  peguerin authored Dec 03, 2019
  
  50782de4
- oups deja fait par laeti · b2ca3f5e
  peguerin authored Dec 03, 2019
  
  b2ca3f5e
- add adapter fasta · 809b36d1
  peguerin authored Dec 03, 2019
  
  809b36d1
- la bonne commande flexbar · d8db5358
  peguerin authored Dec 03, 2019
  
  d8db5358
02 Dec, 2019 3 commits
- flexbar commande qui fonctionne · 5962dad9
  peguerin authored Dec 02, 2019
  
  5962dad9
- test folder flexbar · 71f96b7c
  peguerin authored Dec 02, 2019
  
  71f96b7c
- test flexbar FIRST TRY · db6c7339
  peguerin authored Dec 02, 2019
  
  db6c7339
21 Nov, 2019 6 commits
- correct name errors · b92221a7
  root authored Nov 21, 2019
  
  b92221a7
- test tally derep · 743694f1
  peguerin authored Nov 21, 2019
  
  743694f1
- add test for tally derep · 188b90c5
  peguerin authored Nov 21, 2019
  
  188b90c5
- first contact with this script lol · 8c35a32f
  peguerin authored Nov 21, 2019
  
  8c35a32f
- Merge pull request #29 from lmathon/fix_filter_prinseq · 70794ce9
  peguerin authored Nov 21, 2019
```
Fix filter prinseq
```
  70794ce9
- test prinseq · 5be01c66
  peguerin authored Nov 21, 2019
  
  5be01c66