Skip to content
GitLab
Menu
Projects
Groups
Snippets
Loading...
Help
Help
Support
Community forum
Keyboard shortcuts
?
Submit feedback
Contribute to GitLab
Sign in
Toggle navigation
Menu
Open sidebar
edna
custom_reference_database
Commits
272fa4ae
Commit
272fa4ae
authored
Mar 10, 2021
by
peguerin
Browse files
readme update
parent
17473728
Changes
1
Hide whitespace changes
Inline
Side-by-side
README.md
View file @
272fa4ae
...
@@ -32,6 +32,12 @@ scripts to create our own reference database with our own sequences only and usi
...
@@ -32,6 +32,12 @@ scripts to create our own reference database with our own sequences only and usi
*
formatted FASTA file
*
formatted FASTA file
*
.ldx new nodes for missing taxid into the taxonomy to link to existing genus/family taxid
*
.ldx new nodes for missing taxid into the taxonomy to link to existing genus/family taxid
`raw fasta`
--> validate -->
`valide fasta`
`faulty_format fasta`
`faulty_taxon fasta`
`faulty_taxon fasta`
--> curate (actuellement Laetitia qui fait ce job) -->
`curated_taxon csv`
verifier et corriger à la main le tableau
`curated_taxon csv`
`raw fasta`
`curated_taxon csv`
--> validate -->
`valide fasta`
et mise à jour de la taxonomy
## Environment
## Environment
To create environments with required softwares:
To create environments with required softwares:
...
...
Write
Preview
Markdown
is supported
0%
Try again
or
attach a new file
.
Attach a file
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Cancel
Please
register
or
sign in
to comment