Commit 88c80a28 authored by peguerin's avatar peguerin
Browse files

readme update

parent 0138b3d5
......@@ -67,3 +67,27 @@ conda activate pylib_cbdr
## Usage
First time loading the taxdump
```
mkbdr validate --fasta resources/test/raw.fasta \
--ncbi_taxdump "TAXO/taxdump_2021.tar.gz" \
--output_prefix "test_raw"
```
taxdump previously loaded (faster)
```
mkbdr validate --fasta resources/test/raw.fasta \
--output_prefix "test_raw"
```
Apply curation
```
mkbdr validate --fasta resources/test/raw.fasta \
--curate curated_taxon.csv
--output_prefix "test_curated"
```
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