Commit e47d2fee authored by peguerin's avatar peguerin
Browse files

readme update

parent c5fbf984
......@@ -15,12 +15,12 @@ Scripts to convert FASTA files into reference database with NCBI taxonomy.
## Method
1. [Installation](https://gitlab.mbb.univ-montp2.fr/edna/custom_reference_database/-/wikis/Installing-MKBDR)
2. Input Files
2. [Input Files](https://gitlab.mbb.univ-montp2.fr/edna/custom_reference_database/-/wikis/Files-definition#input-files)
* [species representative records FASTA file](https://gitlab.mbb.univ-montp2.fr/edna/custom_reference_database/-/wikis/Files-definition#representative-sequences)
* [NCBI taxonomy files](https://gitlab.mbb.univ-montp2.fr/edna/custom_reference_database/-/wikis/Files-definition#ncbi-taxonomies-file)
* [Curation table file](https://gitlab.mbb.univ-montp2.fr/edna/custom_reference_database/-/wikis/Files-definition#curation-file)
3. [Quick start](https://gitlab.mbb.univ-montp2.fr/edna/custom_reference_database/-/wikis/home#quick-start)
4. Running MKBDR
4. [Running MKBDR](https://gitlab.mbb.univ-montp2.fr/edna/custom_reference_database/-/wikis/Running-MKBDR)
* [Module validate - Check taxonomy and format validity](https://gitlab.mbb.univ-montp2.fr/edna/custom_reference_database/-/wikis/Validate)
* [Module cureGen - Curation Generation](https://gitlab.mbb.univ-montp2.fr/edna/custom_reference_database/-/wikis/Curegen)
* [Module init_ncbi_taxdump - Download NCBI taxonomy](https://gitlab.mbb.univ-montp2.fr/edna/custom_reference_database/-/wikis/init_ncbi_taxdump)
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