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edna
custom_reference_database
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e47d2fee
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e47d2fee
authored
Apr 06, 2021
by
peguerin
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readme update
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README.md
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@@ -15,12 +15,12 @@ Scripts to convert FASTA files into reference database with NCBI taxonomy.
## Method
1.
[
Installation
](
https://gitlab.mbb.univ-montp2.fr/edna/custom_reference_database/-/wikis/Installing-MKBDR
)
2.
Input Files
2.
[
Input Files
](
https://gitlab.mbb.univ-montp2.fr/edna/custom_reference_database/-/wikis/Files-definition#input-files
)
*
[
species representative records FASTA file
](
https://gitlab.mbb.univ-montp2.fr/edna/custom_reference_database/-/wikis/Files-definition#representative-sequences
)
*
[
NCBI taxonomy files
](
https://gitlab.mbb.univ-montp2.fr/edna/custom_reference_database/-/wikis/Files-definition#ncbi-taxonomies-file
)
*
[
Curation table file
](
https://gitlab.mbb.univ-montp2.fr/edna/custom_reference_database/-/wikis/Files-definition#curation-file
)
3.
[
Quick start
](
https://gitlab.mbb.univ-montp2.fr/edna/custom_reference_database/-/wikis/home#quick-start
)
4.
Running MKBDR
4.
[
Running MKBDR
](
https://gitlab.mbb.univ-montp2.fr/edna/custom_reference_database/-/wikis/Running-MKBDR
)
*
[
Module validate - Check taxonomy and format validity
](
https://gitlab.mbb.univ-montp2.fr/edna/custom_reference_database/-/wikis/Validate
)
*
[
Module cureGen - Curation Generation
](
https://gitlab.mbb.univ-montp2.fr/edna/custom_reference_database/-/wikis/Curegen
)
*
[
Module init_ncbi_taxdump - Download NCBI taxonomy
](
https://gitlab.mbb.univ-montp2.fr/edna/custom_reference_database/-/wikis/init_ncbi_taxdump
)
...
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