Skip to content
GitLab
Menu
Projects
Groups
Snippets
Loading...
Help
Help
Support
Community forum
Keyboard shortcuts
?
Submit feedback
Contribute to GitLab
Sign in
Toggle navigation
Menu
Open sidebar
edna
custom_reference_database
Commits
fde7368c
Commit
fde7368c
authored
Mar 26, 2021
by
peguerin
Browse files
readme update
parent
fb3a16b9
Changes
1
Hide whitespace changes
Inline
Side-by-side
README.md
View file @
fde7368c
...
...
@@ -117,6 +117,7 @@ crash test
```
python3 mkbdr validate --fasta teleo_ok.fasta --curate curated_taxon.csv --output_prefix "truc"
cd TAXO/testouille; tar zxvf taxdump_2021.tar.gz ; cd ../../
python3 mkbdr validate --fasta teleo_ok.fasta --curate curated_taxon.csv --output_prefix "truc" --curate curated_taxon.csv --ncbi_taxdump TAXO/testouille --ncbi_taxdump_edition
```
...
...
@@ -124,10 +125,7 @@ obitools
```
conda activate obitools
## vraiment pas terrible
obitaxonomy -t TAXO/testouille -m 1000000000 -a 'Amphiprion fuscocaudatus':'species':80969
## BIEN
ecotag -t TAXO/testouille -R teleo_valide.fasta -m 0.95 -r test.fasta
ecotag -t TAXO/testouille -R truc_valide.fasta -m 0.95 -r nimp.fasta
```
## Taxonomy
...
...
Write
Preview
Markdown
is supported
0%
Try again
or
attach a new file
.
Attach a file
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Cancel
Please
register
or
sign in
to comment