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Create Running MKBDR
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Apr 06, 2021
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peguerin
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Running-MKBDR.md
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mkbdr curegen --database_globalnames 'Catalogue of Life' --output_prefix res_raw --fasta res_raw_faulty_taxon.fasta
mkbdr validate --fasta tests/data/raw.fasta --curate res_raw_curation.csv --output_prefix res_curated
mkbdr init_ncbi_taxdump --folder_path customtaxonomy/ --decompress
mkbdr validate --fasta tests/data/raw.fasta --curate res_raw_curation.csv --ncbi_taxonomy_edition customtaxonomy/ --output_prefix res_taxo_curated