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# Method
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1. [Installation](https://gitlab.mbb.univ-montp2.fr/edna/custom_reference_database/-/wikis/Installing-MKBDR)
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2. [Input Files](https://gitlab.mbb.univ-montp2.fr/edna/custom_reference_database/-/wikis/Files-definition#input-files)
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* [species representative records FASTA file](https://gitlab.mbb.univ-montp2.fr/edna/custom_reference_database/-/wikis/Files-definition#representative-sequences)
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* [NCBI taxonomy files](https://gitlab.mbb.univ-montp2.fr/edna/custom_reference_database/-/wikis/Files-definition#ncbi-taxonomies-file)
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* [Curation table file](https://gitlab.mbb.univ-montp2.fr/edna/custom_reference_database/-/wikis/Files-definition#curation-file)
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3. [Quick start](https://gitlab.mbb.univ-montp2.fr/edna/custom_reference_database/-/wikis/home#quick-start)
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4. [Running MKBDR](https://gitlab.mbb.univ-montp2.fr/edna/custom_reference_database/-/wikis/Running-MKBDR)
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* [Module validate - Check taxonomy and format validity](https://gitlab.mbb.univ-montp2.fr/edna/custom_reference_database/-/wikis/Validate)
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* [Module cureGen - Curation Generation](https://gitlab.mbb.univ-montp2.fr/edna/custom_reference_database/-/wikis/Curegen)
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* [Module init_ncbi_taxdump - Download NCBI taxonomy](https://gitlab.mbb.univ-montp2.fr/edna/custom_reference_database/-/wikis/init_ncbi_taxdump)
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* [Apply taxonomy curation](https://gitlab.mbb.univ-montp2.fr/edna/custom_reference_database/-/wikis/Validate#basic-curation)
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* [Add new species to NCBI taxonomy](https://gitlab.mbb.univ-montp2.fr/edna/custom_reference_database/-/wikis/Validate#using-a-local-ncbi-taxonomy-performs-a-curation-which-add-new-species-to-your-local-taxonomy)
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4. [Output results](https://gitlab.mbb.univ-montp2.fr/edna/custom_reference_database/-/wikis/Files-definition#output-files)
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5. [How-to guide](https://gitlab.mbb.univ-montp2.fr/edna/custom_reference_database/-/wikis/How-to-guide)
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6. [Reference](https://gitlab.mbb.univ-montp2.fr/edna/custom_reference_database/-/wikis/home#credits)
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7. [Metabarcoding context - discussion to go further]()
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