Commit 37d004e5 authored by peguerin's avatar peguerin
Browse files

update README

parent 1eae70dc
......@@ -6,7 +6,7 @@ Only_obitools pipeline using NEXTFLOW
1. [Introduction](#1-introduction)
2. [Installation](#2-installation)
1. [Requirements](#21-requirements)
2. [Optional components](#22-optional-components)
2. [Downloading](#22-downloading)
3. [Reporting bugs](#3-reporting-bugs)
4. [Running the pipeline](#4-running-the-pipeline)
......@@ -18,8 +18,6 @@ Here, we reproduce the bioinformatics pipeline used by [SPYGEN](http://www.spyge
# 2. Installation
You will need to install
## 2.1. Requirements
In order to run "only_obitools", you need a couple of programs. Most of
......@@ -29,10 +27,19 @@ programs and libraries you absolutely need are:
- [OBItools](https://pythonhosted.org/OBITools/welcome.html#installing-the-obitools)
## 2.2. Optional components
## 2.2. Downloading
Other libraries are optional and only limit the features that are
built. These include:
* open a shell
* make a folder, name it yourself, I named it workdir
```
mkdir workdir
cd workdir
```
* clone the project and switch to the main folder, it's your working directory
```
git clone http://gitlab.mbb.univ-montp2.fr/edna/nextflow_obitools.git
cd nextflow_obitools
```
# 3. Reporting bugs
......
Supports Markdown
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment