Commit 24c72c58 authored by peguerin's avatar peguerin
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edit README

parent cd981eb6
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# 1. Introduction
Here, we reproduce the bioinformatics pipeline used by *SPYGEN* http://www.spygen.com/ to generate species environmental presence from raw eDNA data. This pipeline is based on *OBItools* https://git.metabarcoding.org/obitools/obitools/wikis/home a set of python programs designed to analyse Next Generation Sequencer outputs (illumina) in the context of DNA Metabarcoding.
Here, we reproduce the bioinformatics pipeline used by [SPYGEN](http://www.spygen.com/) to generate species environmental presence from raw eDNA data. This pipeline is based on [OBItools](https://git.metabarcoding.org/obitools/obitools/wikis/home) a set of python programs designed to analyse Next Generation Sequencer outputs (illumina) in the context of DNA Metabarcoding.
# 2. Installation
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