Commit 4cb5467c authored by peguerin's avatar peguerin
Browse files

edit readme again

parent b0ef2a20
......@@ -50,15 +50,13 @@ verbose as possible — e.g. include the command line, etc
Quickstart
-create a new folder for nextflow to work in
switch to this new folder
open a shell
type in "curl -fsSL get.nextflow.io | bash" to download nextflow into this folder
make sure that the programs stated in the Requirements section below are installed on your machine
after nextflow is downloaded, replace all the "YOUR_***" parts in the following command with your own paths
1. create a new folder for nextflow to work in
2. switch to this new folder
3. open a shell
4. type in `curl -fsSL get.nextflow.io | bash` to download nextflow into this folder
5. make sure that the programs stated in the Requirements section below are installed on your machine. After nextflow is downloaded, replace all the "YOUR_***" parts in the following command with your own paths
"./nextflow run main.nf
6. run your command : `./nextflow run main.nf`
run your command
that's it ! The pipeline is running and crunching your data. Look for the overview.txt or. overview_new.txt in your output folder after the pipeline is finished
that's it ! The pipeline is running and crunching your data. Look for the overview.txt or. overview_new.txt in your output folder after the pipeline is finished
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