Commit 4cb5467c authored by peguerin's avatar peguerin
Browse files

edit readme again

parent b0ef2a20
...@@ -50,15 +50,13 @@ verbose as possible — e.g. include the command line, etc ...@@ -50,15 +50,13 @@ verbose as possible — e.g. include the command line, etc
Quickstart Quickstart
-create a new folder for nextflow to work in 1. create a new folder for nextflow to work in
switch to this new folder 2. switch to this new folder
open a shell 3. open a shell
type in "curl -fsSL get.nextflow.io | bash" to download nextflow into this folder 4. type in `curl -fsSL get.nextflow.io | bash` to download nextflow into this folder
make sure that the programs stated in the Requirements section below are installed on your machine 5. make sure that the programs stated in the Requirements section below are installed on your machine. After nextflow is downloaded, replace all the "YOUR_***" parts in the following command with your own paths
after nextflow is downloaded, replace all the "YOUR_***" parts in the following command with your own paths
"./nextflow run main.nf 6. run your command : `./nextflow run main.nf`
run your command that's it ! The pipeline is running and crunching your data. Look for the overview.txt or. overview_new.txt in your output folder after the pipeline is finished
that's it ! The pipeline is running and crunching your data. Look for the overview.txt or. overview_new.txt in your output folder after the pipeline is finished
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