Commit a7f99013 authored by peguerin's avatar peguerin
Browse files

update README

parent 43cbdd91
......@@ -7,6 +7,7 @@ Only_obitools pipeline
2. [Installation](#2-installation)
3. [Reporting bugs](#3-reporting-bugs)
4. [Running the pipeline](#4-running-the-pipeline)
5. [Results](#5-results)
-----------------
......@@ -62,3 +63,10 @@ bash pipeline.sh /path/to/data /path/to/reference_database
order of arguments is important :
1. absolute path to the folder which contains paired-end raw reads files and sample description file
2. absolute path to the folder which contains reference database files
# 5. Results
* [main](main) : contains intermediate files
* [final](main) : contains all the matrix species/sample for each sequencing run
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