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edna
reference_database
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52730817
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52730817
authored
Jan 07, 2019
by
peguerin
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readme update
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@@ -82,7 +82,7 @@ You can use the absolute path of the folder of your reference database as the `/
Once you generated your reference database, you need the
`db_{prefix}.fasta`
file (see Results section above).
Type the following command to convert your reference database into STAMPA format :
```
python3 scripts/formatDB_obifasta_to_stampa.py -f db_{prefix}.fasta -o /path/to/reference_database_stampa.fasta
python3 scripts/formatDB_obifasta_to_stampa.py -f
/path/to/
db_{prefix}.fasta -o /path/to/reference_database_stampa.fasta
```
This command generates a file
`/path/to/reference_database_stampa.fasta`
which you can use as a reference database for the pipeline :
*
[
bash_swarm
](
https://gitlab.mbb.univ-montp2.fr/edna/bash_swarm
)
\ No newline at end of file
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