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edna
reference_database
Commits
826e1f5a
Commit
826e1f5a
authored
Jan 23, 2020
by
peguerin
Browse files
singularity path
parent
a9d0509f
Changes
1
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config.sh
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826e1f5a
...
...
@@ -18,3 +18,19 @@ ecoPCR_L=150
primer5
=
ACACCGCCCGTCACTCT
### 3' primer sequence
primer3
=
CTTCCGGTACACTTACCATG
OBITOOLS_SIMG
=
"/media/superdisk/utils/conteneurs/obitools.simg"
## singularity exec command
SINGULARITY_EXEC_CMD
=
"singularity exec --bind /media/superdisk:/media/superdisk"
###############################################################################
## softwares
#### obitools
ecotag
=
${
SINGULARITY_EXEC_CMD
}
" "
${
OBITOOLS_SIMG
}
" ecotag"
obiannotate
=
${
SINGULARITY_EXEC_CMD
}
" "
${
OBITOOLS_SIMG
}
" obiannotate"
obiuniq
=
${
SINGULARITY_EXEC_CMD
}
" "
${
OBITOOLS_SIMG
}
" obiuniq"
obigrep
=
${
SINGULARITY_EXEC_CMD
}
" "
${
OBITOOLS_SIMG
}
" obigrep"
ecoPCR
=
${
SINGULARITY_EXEC_CMD
}
" "
${
OBITOOLS_SIMG
}
" ecoPCR"
\ No newline at end of file
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