singularity path

config.sh

@@ -18,3 +18,19 @@ ecoPCR_L=150
 primer5=ACACCGCCCGTCACTCT
 ### 3' primer sequence
 primer3=CTTCCGGTACACTTACCATG
+
+
+
+OBITOOLS_SIMG="/media/superdisk/utils/conteneurs/obitools.simg"
+
+## singularity exec command
+SINGULARITY_EXEC_CMD="singularity exec --bind /media/superdisk:/media/superdisk"
+
+###############################################################################
+## softwares
+#### obitools
+ecotag=${SINGULARITY_EXEC_CMD}" "${OBITOOLS_SIMG}" ecotag"
+obiannotate=${SINGULARITY_EXEC_CMD}" "${OBITOOLS_SIMG}" obiannotate"
+obiuniq=${SINGULARITY_EXEC_CMD}" "${OBITOOLS_SIMG}" obiuniq"
+obigrep=${SINGULARITY_EXEC_CMD}" "${OBITOOLS_SIMG}" obigrep"
+ecoPCR=${SINGULARITY_EXEC_CMD}" "${OBITOOLS_SIMG}" ecoPCR"
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