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Commit 8a105b16 authored by vmarques's avatar vmarques
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fix bug primers

parent 826e1f5a
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build_bdr_rapidrun.sh
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...@@ -4,10 +4,10 @@ source ./config.sh ...@@ -4,10 +4,10 @@ source ./config.sh
for marker in `awk -F, '{ print $1}' infos/markers.csv` for marker in `awk -F, '{ print $1}' infos/markers.csv`
do do
primer3=`grep $marker infos/markers.csv | cut -d, -f2` primer3=`grep $marker infos/markers.csv | cut -d, -f3`
primer5=`grep $marker infos/markers.csv | cut -d, -f3` primer5=`grep $marker infos/markers.csv | cut -d, -f2`
echo $marker $primer3 $primer5 echo $marker $primer3 $primer5
MARKER_REF_DB_DIR="../"${marker}"_reference_database" MARKER_REF_DB_DIR="../reference_database_"${marker}""
mkdir -p "${MARKER_REF_DB_DIR}" mkdir -p "${MARKER_REF_DB_DIR}"
for DX in `ls "${rd_prefix}"*dx` for DX in `ls "${rd_prefix}"*dx`
do do
......
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