Commit 8a105b16 authored by vmarques's avatar vmarques
Browse files

fix bug primers

parent 826e1f5a
...@@ -4,10 +4,10 @@ source ./config.sh ...@@ -4,10 +4,10 @@ source ./config.sh
for marker in `awk -F, '{ print $1}' infos/markers.csv` for marker in `awk -F, '{ print $1}' infos/markers.csv`
do do
primer3=`grep $marker infos/markers.csv | cut -d, -f2` primer3=`grep $marker infos/markers.csv | cut -d, -f3`
primer5=`grep $marker infos/markers.csv | cut -d, -f3` primer5=`grep $marker infos/markers.csv | cut -d, -f2`
echo $marker $primer3 $primer5 echo $marker $primer3 $primer5
MARKER_REF_DB_DIR="../"${marker}"_reference_database" MARKER_REF_DB_DIR="../reference_database_"${marker}""
mkdir -p "${MARKER_REF_DB_DIR}" mkdir -p "${MARKER_REF_DB_DIR}"
for DX in `ls "${rd_prefix}"*dx` for DX in `ls "${rd_prefix}"*dx`
do do
......
Supports Markdown
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment