Commit e8d09b0a authored by peguerin's avatar peguerin
Browse files

edit build bdr

parent 2ab89a74
......@@ -47,6 +47,8 @@ obigrep -d "${rd_prefix}" --require-rank=family v_"${rd_prefix}"
obiannotate --uniq-id v_"${rd_prefix}"_clean_uniq_clean.fasta > db_"${rd_prefix}".fasta
# your reference database is built !
#add spygen taxonomy [doesn't seems to work]
#obitaxonomy -d "${rd_prefix}" -a 'Cnasus_Ctoxo_Tsouffia':'species':10000087
#obitaxonomy -d "${rd_prefix}" -a 'Cidella_Hmolitrix':'species':10000088
......@@ -54,3 +56,5 @@ obiannotate --uniq-id v_"${rd_prefix}"_clean_uniq_clean.fasta > db_"${rd_prefix}
obiconvert --skip-on-error --fasta -t ./TAXO --ecopcrdb-output=mitofish/"${rd_prefix}" mitofish/mitogene_12S.fasta
obiconvert --skip-on-error --embl -t ./TAXO --ecopcrdb-output="${rd_prefix}" EMBL/rel_std_*.dat
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