reference_database issueshttps://gitlab.mbb.univ-montp2.fr/edna/reference_database/-/issues2021-02-18T10:12:44Zhttps://gitlab.mbb.univ-montp2.fr/edna/reference_database/-/issues/4Update2021-02-18T10:12:44ZvmarquesUpdatethis repo needs updating to remove singularity usage and replace all by condathis repo needs updating to remove singularity usage and replace all by condahttps://gitlab.mbb.univ-montp2.fr/edna/reference_database/-/issues/5ENA releases are no more - update needed2021-10-29T11:50:07ZvmarquesENA releases are no more - update neededIn the classic download of reference database, we download ENA release.
Last one was num 143 but it appears it is the last one.
For further updates, a new protocol will be required.
Here is the notice:
```
This was the last ENA quate...In the classic download of reference database, we download ENA release.
Last one was num 143 but it appears it is the last one.
For further updates, a new protocol will be required.
Here is the notice:
```
This was the last ENA quaterly release using the old paradigm. For new data use the snapshot_latest folder in the parent folder.
```
From here :
`http://ftp.ebi.ac.uk/pub/databases/ena/sequence/release/README_ENA_RELEASE_IS_NO_MORE`peguerinpierre-edouard.guerin@cefe.cnrs.frpeguerinpierre-edouard.guerin@cefe.cnrs.frhttps://gitlab.mbb.univ-montp2.fr/edna/reference_database/-/issues/6Cleaning NCBI2021-10-29T11:51:27ZvmarquesCleaning NCBIAt the moment we use an uncurated version of NCBI
Check for algorithms/methods to automatically clean some sequences identified as erroneousAt the moment we use an uncurated version of NCBI
Check for algorithms/methods to automatically clean some sequences identified as erroneous