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  • #1

Closed
Open
Created Apr 15, 2019 by eboulanger@eboulangerMaintainer

species on GenBank 12S Tele01 missing in db_embl_std.fasta

some species present on GenBank for the Tele01 12S primer do not appear on the extracted reference database. e.g. Syngnathus typhle, accession n° KU925872.1: whole mitogenome on GenBank. But it is not in the reference database (searched in db_embl_std.fasta)

list of Mediterranean species for which this is the case: [1] "Merlangius merlangus" "Helicolenus dactylopterus" "Istiophorus albicans" "Cetorhinus maximus"
[5] "Alosa alosa" "Thunnus albacares" "Makaira nigricans" "Istiompax indica"
[9] "Kajikia albida" "Tetrapturus georgii" "Coregonus lavaretus" "Salmo trutta"
[13] "Pagrus major" "Pampus argenteus" "Lampanyctus crocodilus" "Etmopterus spinax"
[17] "Squalus megalops" "Carcharhinus altimus" "Carcharhinus plumbeus" "Sardinella aurita"
[21] "Sparus aurata" "Beryx splendens" "Syngnathus typhle" "Trachurus trachurus"
[25] "Symphodus roissali" "Syngnathus abaster" "Symphodus cinereus" "Tetrapturus belone"
[29] "Raja clavata" "Acipenser sturio" "Echeneis naucrates" "Acipenser naccarii"
[33] "Amblyraja radiata" "Holacanthus ciliaris" "Terapon jarbua" "Symphodus mediterraneus"
[37] "Labrus merula" "Plotosus lineatus" "Pagrus auriga" "Epinephelus malabaricus"
[41] "Epinephelus coioides" "Abudefduf vaigiensis" "Dipturus oxyrinchus" "Mobula mobular"
[45] "Lagocephalus spadiceus" "Facciolella oxyrhyncha" "Netuma thalassina" "Labrus viridis"
[49] "Scomber colias"

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