Commit f9668db4 authored by peguerin's avatar peguerin

readme update

parent 46a48a9c
......@@ -80,8 +80,9 @@ You can use the absolute path of the folder of your reference database as the `/
## Reference database in STAMPA format
Once you generated your reference database, you need the `db_{prefix}.fasta` file (see Results section above).
To convert your reference database into STAMPA format :
Type the following command to convert your reference database into STAMPA format :
```
python3 scripts/formatDB_obifasta_to_stampa.py -f db_{prefix}.fasta -o /path/to/reference_database_stampa.fasta
```
It will generate a file `/path/to/reference_database_stampa.fasta` which you can use as a reference database into the pipeline [bash_swarm](https://gitlab.mbb.univ-montp2.fr/edna/bash_swarm)
\ No newline at end of file
It generates a file `/path/to/reference_database_stampa.fasta` which you can use as a reference database for the pipeline :
* [bash_swarm](https://gitlab.mbb.univ-montp2.fr/edna/bash_swarm)
\ No newline at end of file
Markdown is supported
0% or
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment