Commit 08114143 authored by peguerin's avatar peguerin
Browse files

debug step 1 4

parent 7e716c5e
......@@ -21,7 +21,7 @@ rule split_sequences:
input:
'03-assign_sequences/{run}.ali.assigned.fastq'
params:
'02-demultiplex/01-raw/{run}_sample_'
'../02-demultiplex/01-raw/{run}_sample_'
singularity:
config["container"]
log:
......
......@@ -30,3 +30,6 @@ cd 01-assembly
snakemake -s Snakefile -j 8 --use-singularity --singularity-args "--bind /media/superdisk:/media/superdisk" --latency-wait 120
## clean
snakemake -s Snakefile --delete-all-output --dry-run
snakemake -s Snakefile --delete-all-output
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