Commit 7e716c5e authored by peguerin's avatar peguerin
Browse files

debug demultiplex

parent 4fefc9e3
### Assign each sequence record to the corresponding sample/marker combination ### Assign each sequence record to the corresponding sample/marker combination
rule assign_sequences: rule assign_sequences:
input: input:
'01-assembly/{run}/{run}.ali.fastq', '02-remove_unaligned/{run}.ali.fastq',
output: output:
assign='03-assign_sequences/{run}.ali.assigned.fastq', assign='03-assign_sequences/{run}.ali.assigned.fastq',
unid='03-assign_sequences/{run}.unidentified.fastq' unid='03-assign_sequences/{run}.unidentified.fastq'
......
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