folder for each run

9d89ef03 · peguerin · d7b0e3e5 · 9d89ef03
Commit 9d89ef03 authored Nov 18, 2019 by peguerin
--- a/00-rules/demultiplex.smk
+++ b/00-rules/demultiplex.smk
@@ -21,7 +21,7 @@ rule split_sequences:
    input:
        '03-assign_sequences/{run}.ali.assigned.fastq'
    params:
-        '../02-demultiplex/01-raw/{run}_sample_'
+        '../02-demultiplex/01-raw/{run}/'
    singularity:
        config["container"]
    log: