Commit 9d89ef03 authored by peguerin's avatar peguerin
Browse files

folder for each run

parent d7b0e3e5
...@@ -21,7 +21,7 @@ rule split_sequences: ...@@ -21,7 +21,7 @@ rule split_sequences:
input: input:
'03-assign_sequences/{run}.ali.assigned.fastq' '03-assign_sequences/{run}.ali.assigned.fastq'
params: params:
'../02-demultiplex/01-raw/{run}_sample_' '../02-demultiplex/01-raw/{run}/'
singularity: singularity:
config["container"] config["container"]
log: log:
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