Commit a4124bfa authored by peguerin's avatar peguerin
Browse files

rename count

parent b0b94f07
......@@ -24,10 +24,10 @@ rule goodlength_samples:
log:
'../99-log/06-goodlength_samples/{run}/{sample}.log'
params:
count=config["good_length_samples"]["count"],
seq_count=config["good_length_samples"]["seq_count"],
seq_length=config["good_length_samples"]["seq_length"]
shell:
'''obigrep -p 'count>{params.count}' -s '^[ACGT]+$' -p 'seq_length>{params.seq_length}' {input} > {output} 2> {log}'''
'''obigrep -p 'count>{params.seq_count}' -s '^[ACGT]+$' -p 'seq_length>{params.seq_length}' {input} > {output} 2> {log}'''
### Clean the sequences for PCR/sequencing errors (sequence variants)
rule clean_pcrerr_samples:
......
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