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edna
snakemake_only_obitools
Commits
d7b0e3e5
Commit
d7b0e3e5
authored
Nov 18, 2019
by
peguerin
Browse files
debug snakefile
parent
73d9958f
Changes
1
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02-demultiplex/Snakefile
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d7b0e3e5
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@@ -23,10 +23,10 @@ include: "../00-rules/filtered.smk"
### Concatenate sequences from each sample of the same run
rule cat_samples:
input:
'03-cleaned/{run}*.c.r.l.u.fasta'
glob_wildcards(
'03-cleaned/{run}*.c.r.l.u.fasta'
params:
'03-cleaned/{run}*.c.r.l.u.fasta'
output:
'../03-filtered/{run}.fasta'
'../03-filtered/{run}.fasta'
shell:
'''cat {params} > {output}'''
\ No newline at end of file
'''cat {params} > {output}'''
\ No newline at end of file
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