Commit d7b0e3e5 authored by peguerin's avatar peguerin
Browse files

debug snakefile

parent 73d9958f
......@@ -23,10 +23,10 @@ include: "../00-rules/filtered.smk"
### Concatenate sequences from each sample of the same run
rule cat_samples:
input:
'03-cleaned/{run}*.c.r.l.u.fasta'
glob_wildcards('03-cleaned/{run}*.c.r.l.u.fasta'
params:
'03-cleaned/{run}*.c.r.l.u.fasta'
output:
'../03-filtered/{run}.fasta'
'../03-filtered/{run}.fasta'
shell:
'''cat {params} > {output}'''
\ No newline at end of file
'''cat {params} > {output}'''
\ No newline at end of file
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