Commit d7b0e3e5 authored by peguerin's avatar peguerin
Browse files

debug snakefile

parent 73d9958f
...@@ -23,10 +23,10 @@ include: "../00-rules/filtered.smk" ...@@ -23,10 +23,10 @@ include: "../00-rules/filtered.smk"
### Concatenate sequences from each sample of the same run ### Concatenate sequences from each sample of the same run
rule cat_samples: rule cat_samples:
input: input:
'03-cleaned/{run}*.c.r.l.u.fasta' glob_wildcards('03-cleaned/{run}*.c.r.l.u.fasta'
params: params:
'03-cleaned/{run}*.c.r.l.u.fasta' '03-cleaned/{run}*.c.r.l.u.fasta'
output: output:
'../03-filtered/{run}.fasta' '../03-filtered/{run}.fasta'
shell: shell:
'''cat {params} > {output}''' '''cat {params} > {output}'''
\ No newline at end of file \ No newline at end of file
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