Commit e505a0e5 authored by peguerin's avatar peguerin
Browse files

add config

parent b195ab19
......@@ -18,8 +18,8 @@ rule goodlength_samples:
log:
'../99-log/06-goodlength_samples/{sample}.log'
params:
count=config["good_length_samples"]["count"],
seq_length=config["good_length_samples"]["seq_length"]
count=config["good_length_samples"]["count"],
seq_length=config["good_length_samples"]["seq_length"]
shell:
'''obigrep -p 'count>{params.count}' -s '^[ACGT]+$' -p 'seq_length>{params.seq_length}' {input} > {output} 2> {log}'''
......
__author__ = "Pierre-Edouard Guerin"
__license__ = "MIT"
configfile: "../config.yaml"
SAMPLES, = glob_wildcards('01-raw/{sample}.fasta')
......
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