CHANGELOG.md 1.29 KB
Newer Older
peguerin's avatar
peguerin committed
1
2
3
# Changelog
All notable changes to this project will be documented in this file.

peguerin's avatar
peguerin committed
4
## [1.1.3] - 27st july 2020
peguerin's avatar
peguerin committed
5
6

### Added
peguerin's avatar
peguerin committed
7

peguerin's avatar
peguerin committed
8
9
* tutorial commands and folders
* clean.sh a script to remove intermediate files, log files and final results files
peguerin's avatar
peguerin committed
10

peguerin's avatar
peguerin committed
11
12
13
14
15
16
17
### Changed

* main.sh launches whole workflow
* fix tutorial commands


## [1.1.2] - 21st july 2020
peguerin's avatar
peguerin committed
18
19
20
21
22
23
24
25
26

### Added

* multithreaded assembly step for large fastq files

### Changed

* fix main.sh so it can run into a single command

peguerin's avatar
peguerin committed
27
28
29
30
### Removed

* picture of DAG files

peguerin's avatar
peguerin committed
31

peguerin's avatar
peguerin committed
32
## [1.1.1] - 3rd july 2020
peguerin's avatar
peguerin committed
33

peguerin's avatar
peguerin committed
34
35
36
### Added

* Tutorial
peguerin's avatar
peguerin committed
37
* Documentation
peguerin's avatar
peguerin committed
38
* gitignore
peguerin's avatar
peguerin committed
39
40
41
* Autorship
* license MIT
* Singularity/Docker recipe for obitools
peguerin's avatar
peguerin committed
42

peguerin's avatar
peguerin committed
43
## [1.1.0] - 22th june 2020
peguerin's avatar
peguerin committed
44
45
46
47

### Added

* data test
peguerin's avatar
peguerin committed
48
49
50
51
52
53
54
* Conda v4.8.2 envs

### Changed

* upgrade snakemake to v5.19.2
* new structure for distribution based on snakemake recommandation [here](https://snakemake.readthedocs.io/en/v5.19.2/snakefiles/deployment.html)

peguerin's avatar
peguerin committed
55
56
57
58
59
### Removed

* infos folder


peguerin's avatar
peguerin committed
60
61
62
## [1.0.1] - 14th june 2020

### Changed
peguerin's avatar
peguerin committed
63
64
65
66

* Absolute path of all_samples.tsv into config.yaml
* Remove redundant paramters into config.yaml
* Fix name of count parameters into filter_samples.smk
peguerin's avatar
peguerin committed
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82


## [1.0.0] - 25th may 2020

### Added
 
* Complete workflow
* snakemake rule system to handle rapidrun files

### Changed

* upgrade singularity to v3.6

### Removed

* marker.csv