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edna
snakemake_rapidrun_obitools
Commits
111f9d3f
Commit
111f9d3f
authored
Sep 07, 2020
by
vmarques
Browse files
fix separator dat files
parent
df83bb5c
Changes
1
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Inline
Side-by-side
01_settings/readwrite_rapidrun_demultiplexing.py
View file @
111f9d3f
...
...
@@ -40,11 +40,10 @@ from Bio.Seq import Seq
## read a sample description .dat file and return a dataframe object
def
read_dat
(
filedat
):
dfdat
=
pandas
.
read_csv
(
filedat
,
sep
=
"
;
"
,
header
=
None
)
dfdat
=
pandas
.
read_csv
(
filedat
,
sep
=
"
\t
"
,
header
=
None
)
dfdat
.
columns
=
[
'plaque'
,
'plaque1'
,
'barcode'
,
'primer5'
,
'primer3'
,
'F'
]
return
dfdat
###############################################################################
# GLOBAL VARIABLES
###############################################################################
...
...
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