Commit 2ae93640 authored by peguerin's avatar peguerin
Browse files

scripts merge samples into runs

parent 0cb41596
## concatenate samples into run
for projet in `ls results/12_rm_internal_samples/`;
do
for marker in `ls results/12_rm_internal_samples/${projet}/`;
do
for run in `ls results/12_rm_internal_samples/${projet}/${marker}/`;
do
echo results/13_cat_samples_into_runs/${projet}/${marker}/${run};
mkdir -p results/13_cat_samples_into_runs/${projet}/${marker}/
cat results/12_rm_internal_samples/${projet}/${marker}/${run}/*.c.r.l.u.fasta > results/13_cat_samples_into_runs/${projet}/${marker}/${run}.fasta
done
done
done
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