rename count params

01_infos/config_laperouse_alsace.yaml

@@ -18,7 +18,7 @@ blacklist:
 illuminapairedend:
   s_min: 40
 good_length_samples:
-  count : 1
+  seq_count : 1
   seq_length : 1
 clean_pcrerr_samples:
   r : 0.05

01_infos/config_test.yaml

@@ -35,7 +35,7 @@ blacklist:
 illuminapairedend:
   s_min: 40
 good_length_samples:
-  count : 1
+  seq_count : 1
   seq_length : 1
 clean_pcrerr_samples:
   r : 0.05

01_infos/config_tiny.yaml

@@ -5,6 +5,11 @@ fichiers:
   rapidrun: 01_infos/all_samples.tsv
   folder_fastq: /media/superdisk/edna/donnees/test/tiny_malpelo-fakarava_rapidrun/
   folder_refdb: /media/superdisk/edna/donnees/reference_database/ref141/
+  dat:
+    mamm: /media/superdisk/edna/donnees/test/tiny_malpelo-fakarava_rapidrun/Mamm.dat
+    teleo: /media/superdisk/edna/donnees/test/tiny_malpelo-fakarava_rapidrun/Teleo.dat
+    chond: /media/superdisk/edna/donnees/test/tiny_malpelo-fakarava_rapidrun/Chond.dat
+    vert: /media/superdisk/edna/donnees/test/tiny_malpelo-fakarava_rapidrun/Vert.dat
 blacklist:
   projet:
     - dummy_run
@@ -15,7 +20,7 @@ blacklist:
 illuminapairedend:
   s_min: 40
 good_length_samples:
-  count : 1
+  seq_count : 1
   seq_length : 1
 clean_pcrerr_samples:
   r : 0.05