relative path conda

02_assembly/rules/illuminapairedend.smk

@@ -10,7 +10,7 @@ rule illuminapairedend:
     output:
         fq='../results/02_assembly/01_illuminapairedend/{run}.fastq'
     conda:
-        'envs/obitools_envs.yaml'
+        '../envs/obitools_envs.yaml'
     singularity:
         config["singularity"]["obitools"]
     log:

02_assembly/rules/remove_unaligned.smk

@@ -8,7 +8,7 @@ rule remove_unaligned:
     output:
         ali='../results/02_assembly/02_remove_unaligned/{run}.ali.fastq'
     conda:
-        'envs/obitools_envs.yaml'
+        '../envs/obitools_envs.yaml'
     singularity:
         config["singularity"]["obitools"]
     log: