init receipe container

Singularity.obitools

+BootStrap: debootstrap
+OSVersion: xenial
+MirrorURL: http://us.archive.ubuntu.com/ubuntu/
+
+%runscript
+    echo "Opening container...ubuntu xenial: OBITOOLS, ecoPRIMERS, ecoPCR, EMBOSS"
+
+%labels
+    MAINTAINER Pierre-Edouard_GUERIN
+    INSTITUTE CNRS
+    TEAM Biogeographie_Ecologie_Vertebres
+    BUILD 1.0
+    SINGULARITY_VERSION 2.4.2-dist
+    Obitools 1.0
+    ecoPCR 1.0.1
+    ecoPrimers 0.5
+    EMBOSS 6.6
+
+%post   
+    mv /etc/apt/sources.list /etc/apt/sources.list.bak
+
+    echo "deb http://us.archive.ubuntu.com/ubuntu/ xenial main restricted universe multiverse
+    deb-src http://us.archive.ubuntu.com/ubuntu/ xenial main restricted universe multiverse
+    deb http://us.archive.ubuntu.com/ubuntu/ xenial-security main restricted universe multiverse
+    deb http://us.archive.ubuntu.com/ubuntu/ xenial-updates main restricted universe multiverse
+    deb http://us.archive.ubuntu.com/ubuntu/ xenial-proposed main restricted universe multiverse
+    deb http://us.archive.ubuntu.com/ubuntu/ xenial-backports main restricted universe multiverse
+    deb-src http://us.archive.ubuntu.com/ubuntu/ xenial-security main restricted universe multiverse
+    deb-src http://us.archive.ubuntu.com/ubuntu/ xenial-updates main restricted universe multiverse
+    deb-src http://us.archive.ubuntu.com/ubuntu/ xenial-proposed main restricted universe multiverse
+    deb-src http://us.archive.ubuntu.com/ubuntu/ xenial-backports main restricted universe multiverse" >> /etc/apt/sources.list
+
+
+    ## git, make, wget
+    apt-get -y --force-yes update
+    apt-get -y --force-yes install build-essential
+    apt-get -y --force-yes install git
+    yes | apt install wget
+    yes | apt-get install autoconf autogen
+
+    ## zlib
+    yes | apt install zlib1g-dev
+
+ 
+    ## OBITOOLS v1
+    yes | apt-get install python-pip
+    yes | pip2 install --upgrade pip==9.0.3
+    pip2 install virtualenv==1.11.0
+    pip2 install ipython==6.0
+    pip2 install sphinx==2.0
+    pip2 install cython==0.24
+    pip2 install OBITools
+
+    ## ecoPRIMERS
+    wget https://git.metabarcoding.org/obitools/ecoprimers/uploads/40f0fe1896a15ca9ad29835f93893464/ecoPrimers.tar.gz
+    tar -zxvf ecoPrimers.tar.gz
+    cd ecoprimers/src/
+    yes | make
+    cp ecoPrimers /usr/local/bin/ecoPrimers
+    cd ../../
+    
+    ## ecoPCR
+    wget https://git.metabarcoding.org/obitools/ecopcr/uploads/aa3828c196570ea156ce6d4baac22b10/ecopcr-1.0.1.tar.gz
+    tar -zxvf ecopcr-*.tar.gz
+    cd ecopcr/src/
+    yes | make
+    cp ecoPCR /usr/local/bin/ecoPCR
+    cd $HOME
+
+    ## EMBOSS seqret
+    yes | apt install emboss
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