Commit 653eaef8 authored by peguerin's avatar peguerin
Browse files

config tutorial file

parent 8009c3cb
singularity:
ednatools: /usr/local/containers/ednatools.simg
obitools: /usr/local/containers/obitools.simg
fichiers:
rapidrun: ../resources/tutorial/tutorial_rapidrun_data/ngs/testmaleplofakarava/rapidrun_metadata/malpelo_fakarava_all_samples.tsv
folder_fastq: ../resources/tutorial/tutorial_rapidrun_data/ngs/testmaleplofakarava/runs/
dat:
mamm: ../resources/tutorial/tutorial_rapidrun_data/ngs/testmaleplofakarava/rapidrun_metadata/Mamm.dat
teleo: ../resources/tutorial/tutorial_rapidrun_data/ngs/testmaleplofakarava/rapidrun_metadata/Teleo.dat
chond: ../resources/tutorial/tutorial_rapidrun_data/ngs/testmaleplofakarava/rapidrun_metadata/Chond.dat
vert: ../resources/tutorial/tutorial_rapidrun_data/ngs/testmaleplofakarava/rapidrun_metadata/Vert.dat
blacklist:
projet:
- dummy_run
run:
- 180430_SN234_A_L001_AIMI-9
- 180504_SND405_A_L001_AIMI-10
- 180504_SND405_A_L002_AIMI-11
illuminapairedend:
nb_chunk: 0
s_min: 40
good_length_samples:
seq_count : 1
seq_length_min : 23
clean_pcrerr_samples:
r : 0.05
assign_taxon:
bdr:
mamm: ../resources/tutorial/tutorial_rapidrun_data/bdr/reference_database_mamm/embl_std
teleo: ../resources/tutorial/tutorial_rapidrun_data/bdr/reference_database_teleo/embl_std
chond: ../resources/tutorial/tutorial_rapidrun_data/bdr/embl_std
vert: ../resources/tutorial/tutorial_rapidrun_data/bdr/embl_std
fasta:
mamm: ../resources/tutorial/tutorial_rapidrun_data/bdr/db_embl_std.fasta
teleo: ../resources/tutorial/tutorial_rapidrun_data/bdr/db_embl_std.fasta
chond: ../resources/tutorial/tutorial_rapidrun_data/bdr/db_embl_std.fasta
vert: ../resources/tutorial/tutorial_rapidrun_data/bdr/db_embl_std.fasta
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