Commit 901b9f5e authored by peguerin's avatar peguerin
Browse files

add config for test data

parent 5173e85b
format: RAPIDRUN
resources:
job: 4
singularity:
ednatools: /usr/local/containers/ednatools.simg
obitools: /usr/local/containers/obitools.simg
fichiers:
rapidrun: resources/test/test_rapidrun_data/ngs/rapidrun_metadata/all_samples.csv
folder_fastq: resources/test/test_rapidrun_data/ngs/runs/
dat:
mamm: resources/test/test_rapidrun_data/ngs/rapidrun_metadata/Mamm.dat
teleo: resources/test/test_rapidrun_data/ngs/rapidrun_metadata/Teleo.dat
chond: resources/test/test_rapidrun_data/ngs/rapidrun_metadata/Chond.dat
vert: resources/test/test_rapidrun_data/ngs/rapidrun_metadata/Vert.dat
blacklist:
projet:
- dummy_run
run:
- dummy_run
illuminapairedend:
nb_chunk: 4
s_min: 40
good_length_samples:
seq_count : 1
seq_length_min : 23
clean_pcrerr_samples:
r : 0.05
assign_taxon:
bdr:
mamm: resources/test/test_rapidrun_data/bdr/reference_database_mamm/embl_std
teleo: resources/test/test_rapidrun_data/bdr/reference_database_teleo/embl_std
chond: resources/test/test_rapidrun_data/bdr/reference_database_chond/embl_std
vert: resources/test/test_rapidrun_data/bdr/reference_database_vert/embl_std
fasta:
mamm: resources/test/test_rapidrun_data/bdr/reference_database_mamm/db_embl_std.fasta
teleo: resources/test/test_rapidrun_data/bdr/reference_database_teleo/db_embl_std.fasta
chond: resources/test/test_rapidrun_data/bdr/reference_database_chond/db_embl_std.fasta
vert: resources/test/test_rapidrun_data/bdr/reference_database_vert/db_embl_std.fasta
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