Commit 9f4a6268 authored by peguerin's avatar peguerin
Browse files

try checkpoint

parent eb68a6d3
......@@ -22,9 +22,8 @@ checkpoint illuminapairedend:
'''illuminapairedend -r {input.R2} {input.R1} --score-min={params.s_min} > {output.fq} 2> {log};'''
def get_chunks(wildcards):
meschunks = checkpoints.illuminapairedend.get(**wildcards).output.fq
chunks = expand(rules.illuminapairedend.output.fq, **wildcards, chunk=listChunks)
def get_chunks(wildcards):
meschunks = expand(rules.illuminapairedend.output.fq, **wildcards, chunk=listChunks)
return meschunks
......
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