Commit a0ed35eb authored by peguerin's avatar peguerin
Browse files

rename min length parameters

parent 0bb81624
......@@ -12,6 +12,6 @@ rule goodlength_samples:
'../logs/04_filter_samples/02_goodlength/{demultiplexs}.log'
params:
seq_count=config["good_length_samples"]["seq_count"],
seq_length=config["good_length_samples"]["seq_length"]
seq_length_min=config["good_length_samples"]["seq_length_min"]
shell:
'''obigrep -p 'count>{params.seq_count}' -s '^[ACGT]+$' -p 'seq_length>{params.seq_length}' {input} > {output} 2> {log}'''
\ No newline at end of file
'''obigrep -p 'count>{params.seq_count}' -s '^[ACGT]+$' -p 'seq_length>{params.seq_length_min}' {input} > {output} 2> {log}'''
\ No newline at end of file
......@@ -20,7 +20,7 @@ illuminapairedend:
s_min: 40
good_length_samples:
seq_count : 1
seq_length : 31
seq_length_min : 23
clean_pcrerr_samples:
r : 0.05
assign_taxon:
......
Markdown is supported
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment