rename min length parameters

04_filter_samples/rules/goodlength_samples.smk

@@ -12,6 +12,6 @@ rule goodlength_samples:
         '../logs/04_filter_samples/02_goodlength/{demultiplexs}.log'
     params:
         seq_count=config["good_length_samples"]["seq_count"],
-        seq_length=config["good_length_samples"]["seq_length"]        
+        seq_length_min=config["good_length_samples"]["seq_length_min"]
     shell:
-        '''obigrep  -p 'count>{params.seq_count}' -s '^[ACGT]+$' -p 'seq_length>{params.seq_length}' {input} > {output} 2> {log}'''
\ No newline at end of file
+        '''obigrep  -p 'count>{params.seq_count}' -s '^[ACGT]+$' -p 'seq_length>{params.seq_length_min}' {input} > {output} 2> {log}'''
\ No newline at end of file

config/config_marbec_rapdirun_test.yaml

@@ -20,7 +20,7 @@ illuminapairedend:
   s_min: 40
 good_length_samples:
   seq_count : 1
-  seq_length : 31
+  seq_length_min : 23
 clean_pcrerr_samples:
   r : 0.05
 assign_taxon: