Commit b8e06699 authored by peguerin's avatar peguerin
Browse files

try checkpoint

parent 9f4a6268
......@@ -73,7 +73,7 @@ rule all:
expand('../logs/02_assembly/02_remove_unaligned/{run}.log',run=uniqRuns),
expand('../logs/02_assembly/01_illuminapairedend/{run}_c{chunk}.log',run=uniqRuns, chunk=listChunks)
#ruleorder: split_fastq > illuminapairedend > remove_unaligned
ruleorder: split_fastq > illuminapairedend > merge_chunks > remove_unaligned
#include: "rules/illuminapairedend.smk"
#include: "rules/remove_unaligned.smk"
......
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