Commit c22cea93 authored by peguerin's avatar peguerin
Browse files

fix input assembly path

parent 55ae0d82
......@@ -10,5 +10,5 @@ rule assign_sequences:
log:
'../logs/03_demultiplex/01_assign_sequences/{demultiplex}.log'
shell:
'''ngsfilter -t {params.dmulti[dat]} -u {output.unid} ../02_assembly/02_remove_unaligned/{params.dmulti[run]}.ali.fastq --fasta-output > {output.assign} 2> {log}'''
'''ngsfilter -t {params.dmulti[dat]} -u {output.unid} ../results/02_assembly/02_remove_unaligned/{params.dmulti[run]}.ali.fastq --fasta-output > {output.assign} 2> {log}'''
Supports Markdown
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment