test ecotag with sdx files

config/config_marbec_rapdirun_test_sdx.yaml

+singularity:
+  ednatools: /usr/local/containers/ednatools.simg
+  obitools: /usr/local/containers/obitools.simg
+fichiers:
+  rapidrun: /home/peguerin/donnees/ngs/testmaleplofakarava/rapidrun_metadata/malpelo_fakarava_all_samples.tsv
+  folder_fastq: /home/peguerin/donnees/ngs/testmaleplofakarava/runs/
+  dat:
+    mamm: /home/peguerin/donnees/ngs/testmaleplofakarava/rapidrun_metadata/Mamm.dat
+    teleo: /home/peguerin/donnees/ngs/testmaleplofakarava/rapidrun_metadata/Teleo.dat
+    chond: /home/peguerin/donnees/ngs/testmaleplofakarava/rapidrun_metadata/Chond.dat
+    vert: /home/peguerin/donnees/ngs/testmaleplofakarava/rapidrun_metadata/Vert.dat
+blacklist:
+  projet:
+    - dummy_run
+  run:
+    - 180430_SN234_A_L001_AIMI-9
+    - 180504_SND405_A_L001_AIMI-10
+    - 180504_SND405_A_L002_AIMI-11
+illuminapairedend:
+  s_min: 40
+good_length_samples:
+  seq_count : 1
+  seq_length : 1
+clean_pcrerr_samples:
+  r : 0.05
+assign_taxon:
+  bdr:
+    mamm: /media/superdisk/edna/donnees/reference_database/reference_database_mamm/embl_std
+    teleo: /media/superdisk/edna/donnees/reference_database/reference_database_teleo/embl_std
+    chond: /media/superdisk/edna/donnees/reference_database/reference_database_chond/embl_std
+    vert: /media/superdisk/edna/donnees/reference_database/reference_database_vert/embl_std
+  fasta:
+    mamm: /media/superdisk/edna/donnees/reference_database/reference_database_mamm/db_embl_std.fasta
+    teleo: /media/superdisk/edna/donnees/reference_database/reference_database_teleo/db_embl_std.fasta
+    chond: /media/superdisk/edna/donnees/reference_database/reference_database_chond/db_embl_std.fasta
+    vert: /media/superdisk/edna/donnees/reference_database/reference_database_vert/db_embl_std.fasta