Commit d318747e authored by peguerin's avatar peguerin
Browse files

test ecotag with sdx files

parent 7d1b9027
singularity:
ednatools: /usr/local/containers/ednatools.simg
obitools: /usr/local/containers/obitools.simg
fichiers:
rapidrun: /home/peguerin/donnees/ngs/testmaleplofakarava/rapidrun_metadata/malpelo_fakarava_all_samples.tsv
folder_fastq: /home/peguerin/donnees/ngs/testmaleplofakarava/runs/
dat:
mamm: /home/peguerin/donnees/ngs/testmaleplofakarava/rapidrun_metadata/Mamm.dat
teleo: /home/peguerin/donnees/ngs/testmaleplofakarava/rapidrun_metadata/Teleo.dat
chond: /home/peguerin/donnees/ngs/testmaleplofakarava/rapidrun_metadata/Chond.dat
vert: /home/peguerin/donnees/ngs/testmaleplofakarava/rapidrun_metadata/Vert.dat
blacklist:
projet:
- dummy_run
run:
- 180430_SN234_A_L001_AIMI-9
- 180504_SND405_A_L001_AIMI-10
- 180504_SND405_A_L002_AIMI-11
illuminapairedend:
s_min: 40
good_length_samples:
seq_count : 1
seq_length : 1
clean_pcrerr_samples:
r : 0.05
assign_taxon:
bdr:
mamm: /media/superdisk/edna/donnees/reference_database/reference_database_mamm/embl_std
teleo: /media/superdisk/edna/donnees/reference_database/reference_database_teleo/embl_std
chond: /media/superdisk/edna/donnees/reference_database/reference_database_chond/embl_std
vert: /media/superdisk/edna/donnees/reference_database/reference_database_vert/embl_std
fasta:
mamm: /media/superdisk/edna/donnees/reference_database/reference_database_mamm/db_embl_std.fasta
teleo: /media/superdisk/edna/donnees/reference_database/reference_database_teleo/db_embl_std.fasta
chond: /media/superdisk/edna/donnees/reference_database/reference_database_chond/db_embl_std.fasta
vert: /media/superdisk/edna/donnees/reference_database/reference_database_vert/db_embl_std.fasta
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