Commit d42bc550 authored by peguerin's avatar peguerin
Browse files

try checkpoint

parent 26e9e8cf
......@@ -5,10 +5,10 @@ __license__ = "MIT"
## On scattered fastq chunk Paired end alignment then keep reads with quality > 40
rule illuminapairedend:
input:
R1='../results/02_assembly/scaterred/{run}_R1_{chunk}.fastq',
R2='../results/02_assembly/scaterred/{run}_R2_{chunk}.fastq'
R1='../results/02_assembly/scaterred/{run}_R1_c{chunk}.fastq',
R2='../results/02_assembly/scaterred/{run}_R2_c{chunk}.fastq'
output:
fq='../results/02_assembly/01_illuminapairedend/{run}_{chunk}.fastq'
fq='../results/02_assembly/01_illuminapairedend/{run}_c{chunk}.fastq'
conda:
'../envs/obitools_envs.yaml'
singularity:
......
Supports Markdown
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment