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edna
snakemake_rapidrun_obitools
Commits
df83bb5c
Commit
df83bb5c
authored
Sep 04, 2020
by
peguerin
Browse files
fix csv
parent
d63f651e
Changes
1
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Inline
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01_settings/readwrite_rapidrun_demultiplexing.py
View file @
df83bb5c
...
...
@@ -55,7 +55,7 @@ rapidrunfile = config['fichiers']['rapidrun']
#rapidrunfile="01_infos/all_samples.tsv"
## read 'rapidrun' .tsv file
dfr
=
pandas
.
read_csv
(
rapidrunfile
,
sep
=
"
\t
"
)
dfr
=
pandas
.
read_csv
(
rapidrunfile
,
sep
=
"
;
"
)
dfr
.
columns
=
[
'plaque'
,
'run'
,
'sample'
,
'projet'
,
'marker'
]
## remove blacklisted projets
blacklistedProjets
=
config
[
'blacklist'
][
'projet'
]
...
...
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