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edna
snakemake_rapidrun_obitools
Commits
dfed488b
Commit
dfed488b
authored
Apr 07, 2021
by
peguerin
Browse files
scripts link projmarkrun to projmarkrun_custom
parent
a0cb5aee
Changes
1
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Inline
Side-by-side
scripts/link_custom_runs.sh
0 → 100644
View file @
dfed488b
CUSTOMPROJMARKRUNFILE
=
$1
INFOLDER
=
"results/13_cat_samples_into_runs/"
while
IFS
=
$'
\t
'
read
-r
-a
myArray
do
echo
"
${
INFOLDER
}
""
${
myArray
[1]
}
"
"
${
INFOLDER
}
""
${
myArray
[0]
}
"
ln
-s
"
${
PWD
}
""/""
${
INFOLDER
}
""
${
myArray
[1]
}
"".fasta"
"
${
INFOLDER
}
""
${
myArray
[0]
}
"".fasta"
done
<
${
CUSTOMPROJMARKRUNFILE
}
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