rename count params

00_rules/filter_samples.smk

@@ -24,10 +24,10 @@ rule goodlength_samples:
     log:
         '../99_log/04_filter_samples/02_goodlength/{demultiplexs}.log'
     params:
-        count=config["good_length_samples"]["count"],
+        seq_count=config["good_length_samples"]["seq_count"],
         seq_length=config["good_length_samples"]["seq_length"]        
     shell:
-        '''obigrep  -p 'count>{params.count}' -s '^[ACGT]+$' -p 'seq_length>{params.seq_length}' {input} > {output} 2> {log}'''
+        '''obigrep  -p 'count>{params.seq_count}' -s '^[ACGT]+$' -p 'seq_length>{params.seq_length}' {input} > {output} 2> {log}'''
 
 ### Clean the sequences for PCR/sequencing errors (sequence variants)
 rule clean_pcrerr_samples: