Commit e124faeb authored by peguerin's avatar peguerin
Browse files

rename count params

parent 2e7f9235
...@@ -24,10 +24,10 @@ rule goodlength_samples: ...@@ -24,10 +24,10 @@ rule goodlength_samples:
log: log:
'../99_log/04_filter_samples/02_goodlength/{demultiplexs}.log' '../99_log/04_filter_samples/02_goodlength/{demultiplexs}.log'
params: params:
count=config["good_length_samples"]["count"], seq_count=config["good_length_samples"]["seq_count"],
seq_length=config["good_length_samples"]["seq_length"] seq_length=config["good_length_samples"]["seq_length"]
shell: shell:
'''obigrep -p 'count>{params.count}' -s '^[ACGT]+$' -p 'seq_length>{params.seq_length}' {input} > {output} 2> {log}''' '''obigrep -p 'count>{params.seq_count}' -s '^[ACGT]+$' -p 'seq_length>{params.seq_length}' {input} > {output} 2> {log}'''
### Clean the sequences for PCR/sequencing errors (sequence variants) ### Clean the sequences for PCR/sequencing errors (sequence variants)
rule clean_pcrerr_samples: rule clean_pcrerr_samples:
......
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