try checkpoint

eb68a6d3 · peguerin · db8d35e4 · eb68a6d3
Commit eb68a6d3 authored Jul 20, 2020 by peguerin
--- a/02_assembly/rules/chunk_illuminapairedend.smk
+++ b/02_assembly/rules/chunk_illuminapairedend.smk
@@ -24,6 +24,7 @@ checkpoint illuminapairedend:

 def get_chunks(wildcards):
    meschunks = checkpoints.illuminapairedend.get(**wildcards).output.fq
+    chunks = expand(rules.illuminapairedend.output.fq, **wildcards, chunk=listChunks)
    return meschunks