Error running the pipeline
I have an error while running the pipeline, at the step 15_
Here is the output from the nohup:
Activating conda environment: /media/vmarques/DATA/working/laperouse/snakemake_rapidrun_obitools/.snakemake/conda/17f3e483
Activating conda environment: /media/vmarques/DATA/working/laperouse/snakemake_rapidrun_obitools/.snakemake/conda/17f3e483
Activating conda environment: /media/vmarques/DATA/working/laperouse/snakemake_rapidrun_obitools/.snakemake/conda/17f3e483
Activating conda environment: /media/vmarques/DATA/working/laperouse/snakemake_rapidrun_obitools/.snakemake/conda/17f3e483
Activating conda environment: /media/vmarques/DATA/working/laperouse/snakemake_rapidrun_obitools/.snakemake/conda/17f3e483
Activating conda environment: /media/vmarques/DATA/working/laperouse/snakemake_rapidrun_obitools/.snakemake/conda/17f3e483
Activating conda environment: /media/vmarques/DATA/working/laperouse/snakemake_rapidrun_obitools/.snakemake/conda/17f3e483
Activating conda environment: /media/vmarques/DATA/working/laperouse/snakemake_rapidrun_obitools/.snakemake/conda/17f3e483
[Thu Mar 25 05:37:34 2021]
Finished job 6215.
6205 of 6251 steps (99%) done
Select jobs to execute...
Activating conda environment: /media/vmarques/DATA/working/laperouse/snakemake_rapidrun_obitools/.snakemake/conda/17f3e483
[Thu Mar 25 05:37:34 2021]
rule taxonomic_assignment:
input: results/14_dereplicate_runs/LaPerouse/teleo/200206_SN6662_A_L001_AIMI-188.uniq.fasta
output: results/15_taxonomic_assignment/LaPerouse/teleo/200206_SN6662_A_L001_AIMI-188.tag.u.fasta
log: logs/15_taxonomic_assignment/LaPerouse/teleo/200206_SN6662_A_L001_AIMI-188.log
jobid: 6214
wildcards: projmarkrun=LaPerouse/teleo/200206_SN6662_A_L001_AIMI-188
threads: 8
[Thu Mar 25 05:37:34 2021]
Finished job 6245.
6206 of 6251 steps (99%) done
[Thu Mar 25 05:37:34 2021]
Finished job 6230.
6207 of 6251 steps (99%) done
Select jobs to execute...
Failed to solve scheduling problem with ILP solver. Falling back to greedy solver.Run Snakemake with --verbose to see the full solver output for debugging the problem.
Select jobs to execute...
Failed to solve scheduling problem with ILP solver. Falling back to greedy solver.Run Snakemake with --verbose to see the full solver output for debugging the problem.
Activating conda environment: /media/vmarques/DATA/working/laperouse/snakemake_rapidrun_obitools/.snakemake/conda/17f3e483
[Thu Mar 25 05:37:35 2021]
Finished job 6235.
6208 of 6251 steps (99%) done
Select jobs to execute...
Failed to solve scheduling problem with ILP solver. Falling back to greedy solver.Run Snakemake with --verbose to see the full solver output for debugging the problem.
[Thu Mar 25 05:37:35 2021]
Finished job 6225.
6209 of 6251 steps (99%) done
Select jobs to execute...
Failed to solve scheduling problem with ILP solver. Falling back to greedy solver.Run Snakemake with --verbose to see the full solver output for debugging the problem.
[Thu Mar 25 05:37:36 2021]
Finished job 6220.
6210 of 6251 steps (99%) done
Select jobs to execute...
Failed to solve scheduling problem with ILP solver. Falling back to greedy solver.Run Snakemake with --verbose to see the full solver output for debugging the problem.
[Thu Mar 25 05:37:36 2021]
Finished job 6240.
6211 of 6251 steps (99%) done
Select jobs to execute...
Failed to solve scheduling problem with ILP solver. Falling back to greedy solver.Run Snakemake with --verbose to see the full solver output for debugging the problem.
[Thu Mar 25 05:37:38 2021]
Finished job 6.
6212 of 6251 steps (99%) done
Select jobs to execute...
Failed to solve scheduling problem with ILP solver. Falling back to greedy solver.Run Snakemake with --verbose to see the full solver output for debugging the problem.
I am on a new server at marbec